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• Smile Format
  ... loped by David Weininger in the late 1980s.This format used the concept of graph in which nodes represent the atoms and edge
  627 B (92 words) - 04:00, 31 July 2008
• Drug dose
  A dose-response curve is a simple X-Y graph relating the magnitude of a stressor (e.g. concentration of a pollutant, a ...
  8 KB (1322 words) - 08:32, 11 August 2008
• QSAR
  ... s requiring three-dimensional structures, e.g. based on protein [[crystallography]] or molecule [[superposition]]. It uses computed potentials, e.g. the Le ... ... more there exist also approaches using maximum common subgraph searches or graph kernels.
  6 KB (859 words) - 09:16, 20 August 2008
• Synthetic biology
  ... mathematical descriptions have been used with varying accuracy, including graph theory, Boolean networks, ordinary differential equations, stochastic diff ... ... factoring Bacteriophage T7]). Oligonucleotides harvested from a photolithographic or inkjet manufactured DNA chip combined with DNA mismatch error-correct ...
  17 KB (2568 words) - 06:47, 17 September 2008
• Simulated annealing
  ... erial to increase the size of its [[crystal]]s and reduce their [[crystallographic defect|defects]]. The heat causes the [[atom]]s to become unstuck from ... ===Diameter of the search graph===
  22 KB (3441 words) - 08:51, 26 August 2008
• HB plot
  4.) [[Loop (graph theory)|Loop]]s appear as breaks in the diagonal between the cross-diagona ... [[Image:lipo label.png|thumb|right|Beta-lactoglobulin in open (white) and ligand-bound (red) form ...
  8 KB (1156 words) - 09:51, 17 September 2008
• Pharmacodynamics
  ... ich relates effects to the log of concentration. It is just convenient for graphing purposes. It is useful to note that 50% of the receptors are bound when ... The graph shown represents the conc-response for two hypothetical receptor agonists, ...
  8 KB (1104 words) - 17:10, 29 August 2008
• Database
  ... ly pre-dates the relational model. These might be identified as a directed graph with trees on the nodes. ... and other retrieval-focused applications like Google's BigTable, or bibliographic database(library catalogue) systems may use a column-oriented datastore ...
  26 KB (4111 words) - 05:28, 1 September 2008
• Gene Ontology
  ... e of the three ontologies, which are each structured as a directed acyclic graph.
  6 KB (899 words) - 07:05, 1 September 2008
• Quantum mechanics
  For example, here is a graph which shows how |B> can be represented as the sum of the two unit vectors ... ==Bibliography==
  32 KB (5515 words) - 09:01, 4 September 2008
• BioPerl Dependencies
  ... reate [[wp:object oriented programming|objects]] || {{PM|Bio::Graph::SimpleGraph}}* ... clone [[wp:object oriented programming|objects]]|| {{PM|Bio::Graph::ProteinGraph}}
  6 KB (898 words) - 10:39, 8 September 2008
• Bioconductor
  | logo = [[Image:bioclogo.png|100px]] ... ad range of powerful [[Statistics|statistical]] and [[Statistical graphics|graphical]] methods for the analysis of genomic data.
  12 KB (1522 words) - 04:17, 9 September 2008
• Phylogenetic analysis
  ... ding on the input data and the algorithm used. A rooted tree is a directed graph that explicitly identifies a most recent common ancestor (MRCA), usually a ... * [http://www.treefinder.de/ Treefinder], a graphical analysis environment for molecular phylogenetics
  25 KB (3849 words) - 07:10, 9 September 2008
• HIV
  ... d into eight subtypes (or clades), based on the whole genome, which are geographically distinct. The most prevalent are subtypes B (found mainly in North A ... A generalized graph of the relationship between HIV copies (viral load) and CD4 counts over th ...
  42 KB (6578 words) - 18:15, 12 September 2008
• Protein-protein interaction
  ... ns determined by two-hybrid testing. They used a force-directed (Sugiyama) graph drawing algorithm to automatically generate an image of their network. ... tp://bioinfow.dep.usal.es/apid/apid2net.html APID2NET: unified interactome graphic analyzer] is an open access tool, included in Cytoscape, that allows to ...
  12 KB (1655 words) - 09:01, 12 September 2008
• Statistical analysis of significance of sequence alignment
  [[Image:Graph.png|graph.txt]]
  7 KB (1095 words) - 09:52, 16 September 2008
• Flow cytometry
  ... Digital Converter (ADC) which in turn allows for events to be plotted on a graphical scale(One Parameter, Two parameter Histograms). ... files.Histogram files consist ofa list of the events corresponding to the graphical display specified in your acquisition Protocol.One-parameter histogram ...
  7 KB (1057 words) - 11:08, 15 September 2008
• Molecular descriptors
  ... d is the number of bonded neighbors of the atom in the hydrogen suppressed graph. In the reference structure, F has d = 1, C6 has d = 3 and N has d = 2. * Descriptors calculated from 2D graphs
  8 KB (1143 words) - 04:20, 18 September 2008
• Hormone-Receptor Database
  ... etwork is built that represents hormonal signaling pathways as a bipartite graph comprising hormones and tissues as node classes. The involved components, ...
  8 KB (1083 words) - 08:58, 30 September 2008
• Metabolic Network
  [[Image:Pathways.png|frame|In biochemistry, a metabolic pathway is a series of chemical reactio ... ... modelling metabolism. From the study of metabolic networks' topology with graph theory to predictive toxicology and ADME.
  1 KB (211 words) - 03:56, 19 September 2008

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